pangea.contrib.covid19 package

Subpackages

• pangea.contrib.covid19.migrations package
  • Module contents

Submodules

pangea.contrib.covid19.admin module

pangea.contrib.covid19.apps module

class pangea.contrib.covid19.apps.CovidConfig(app_name, app_module)

Bases: django.apps.config.AppConfig

name = 'covid'

pangea.contrib.covid19.bio module

pangea.contrib.covid19.bio.download_kraken2()

Download a custom Kraken2 database for detecting COVID.

pangea.contrib.covid19.bio.kraken2_search_reads(reads, outprefix)

Use Kraken2 to make a fast pass report on reads. Write report to outfile.

pangea.contrib.covid19.models module

pangea.contrib.covid19.serializers module

class pangea.contrib.covid19.serializers.Covid19ReadsUploadSerializer(instance=None, data=<class 'rest_framework.fields.empty'>, **kwargs)

Bases: rest_framework.serializers.Serializer

pangea.contrib.covid19.tasks module

pangea.contrib.covid19.tests module

pangea.contrib.covid19.urls module

pangea.contrib.covid19.utils module

pangea.contrib.covid19.views module

Module contents