pangea.contrib.treeoflife.tests package

Submodules

pangea.contrib.treeoflife.tests.populate_test_db module

class pangea.contrib.treeoflife.tests.populate_test_db.TaxaTree

Bases: object

add_node(taxon_id, parent_id, rank)

create_all_nodes_in_db()

create_node_in_db(taxon_id)

pangea.contrib.treeoflife.tests.populate_test_db.add_names(tree, names_filename)

Add names from names_filename to database.

pangea.contrib.treeoflife.tests.populate_test_db.add_nodes(nodes_filename)

pangea.contrib.treeoflife.tests.populate_test_db.populate_test_db()

pangea.contrib.treeoflife.tests.populate_test_db.tokenize(filehandle)

pangea.contrib.treeoflife.tests.test_treeoflife module

Test suite for TreeOfLife module.

class pangea.contrib.treeoflife.tests.test_treeoflife.TestMicrobeDir(methodName='runTest')

Bases: django.test.testcases.TestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_get_bacteria_entry()

test_get_ecoli_annotation()

test_get_root_annotation()

class pangea.contrib.treeoflife.tests.test_treeoflife.TestMicrobeDirAPI(methodName='runTest')

Bases: rest_framework.test.APITestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_annotate_taxa()

Ensure we can update a defunct taxa name.

test_get_annotated_descendants()

Ensure we can get descendants.

class pangea.contrib.treeoflife.tests.test_treeoflife.TestTreeOfLife(methodName='runTest')

Bases: django.test.testcases.TestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_get_root_by_name()

test_get_root_node()

test_get_specific_genus_by_name()

test_get_specific_species_by_name()

class pangea.contrib.treeoflife.tests.test_treeoflife.TestTreeOfLifeAPI(methodName='runTest')

Bases: rest_framework.test.APITestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_canonicalize_multiple_taxa_name()

Ensure we can update a defunct taxa name.

test_canonicalize_taxa_name()

Ensure we can update a defunct taxa name.

test_canonicalize_taxa_name_case_insensitive()

Ensure we can update a defunct taxa name.

test_get_descendants()

Ensure we can get descendants.

test_search_non_canon_name()

Ensure we can update a defunct taxa name.

test_search_taxa_name()

Ensure we can update a defunct taxa name.

test_search_taxa_name_rank_specified()

Ensure we can update a defunct taxa name.

Module contents