pangea.core.tests package

Submodules

pangea.core.tests.constants module

pangea.core.tests.test_api module

class pangea.core.tests.test_api.OrganizationMembershipTests(methodName='runTest')

Bases: rest_framework.test.APITestCase

add_target_user()

classmethod setUpTestData()

Load initial data for the TestCase.

test_authorized_add_user_to_organization()

test_get_organization_users()

test_unauthenticated_add_user_to_organization()

test_unauthorized_add_user_to_organization()

class pangea.core.tests.test_api.OrganizationTests(methodName='runTest')

Bases: rest_framework.test.APITestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_create_organization()

Ensure authenticated user can create organization.

test_create_unauthed_organization()

Ensure 403 error is throw when trying to create organization if unauthed.

class pangea.core.tests.test_api.ProjectTests(methodName='runTest')

Bases: rest_framework.test.APITestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_add_group_to_project()

test_authorized_project_read()

Ensure authorized user can read private sample group.

test_create_project()

Ensure authorized user can create sample group.

test_no_login_project_read()

Ensure 403 error is thrown if trying to illicitly read private group.

test_public_project_read()

Ensure no login is required to read public group.

test_unauthorized_project_read()

Ensure 403 error is thrown if trying to illicitly read private group.

class pangea.core.tests.test_api.S3ApiKeyTests(methodName='runTest')

Bases: rest_framework.test.APITestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_authorized_s3apikey_list()

Ensure 403 error is thrown if trying to illicitly read api keys.

test_authorized_s3apikey_read()

Ensure authorized user can read private sample group.

test_create_key()

test_no_login_s3apikey_list()

Ensure 403 error is thrown if trying to illicitly read api keys.

test_no_login_s3apikey_read()

Ensure 403 error is thrown if trying to illicitly read private group.

test_not_in_org_create_key()

test_unauth_create_key()

test_unauthorized_s3apikey_list()

Ensure 403 error is thrown if trying to illicitly read api keys.

test_unauthorized_s3apikey_read()

Ensure 403 error is thrown if trying to illicitly read s3apikey.

class pangea.core.tests.test_api.S3BucketTests(methodName='runTest')

Bases: rest_framework.test.APITestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_authorized_s3bucket_list()

Ensure 403 error is thrown if trying to illicitly read api keys.

test_authorized_s3bucket_read()

Ensure authorized user can read private bucket.

test_create_bucket()

test_no_login_s3bucket_list()

Ensure 403 error is thrown if trying to illicitly read api keys.

test_unauthorized_s3bucket_list()

Ensure 403 error is thrown if trying to illicitly read api keys.

class pangea.core.tests.test_api.SampleGroupMembershipTests(methodName='runTest')

Bases: rest_framework.test.APITestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_authorized_add_sample_to_group()

test_get_sample_group_samples()

test_unauthenticated_add_sample_to_group()

test_unauthorized_add_sample_to_group()

class pangea.core.tests.test_api.SampleGroupTests(methodName='runTest')

Bases: rest_framework.test.APITestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_authorized_sample_group_read()

Ensure authorized user can read private sample group.

test_create_sample_group()

Ensure authorized user can create sample group.

test_create_sample_group_with_descriptions()

Ensure authorized user can create sample group.

test_create_unauthenticated_sample_group()

Ensure 403 error is throw when trying to create sample group if unauthenticated.

test_create_unauthorized_sample_group()

Ensure 403 error is throw when trying to create sample group if unauthorized.

test_get_sample_group_manifest()

Ensure authorized user can create sample group.

test_get_sample_group_manifest_with_token_as_param()

Ensure authorized user can get a manifest using the tokan as a param.

test_get_sample_group_metadata_with_token_as_param()

Ensure authorized user can get a manifest using the tokan as a param.

test_get_tarball()

test_no_login_sample_group_list()

Ensure 403 error is thrown if trying to illicitly read private group.

test_no_login_sample_group_read()

Ensure 403 error is thrown if trying to illicitly read private group.

test_public_sample_group_read()

Ensure no login is required to read public group.

test_unauth_get_sample_group_manifest()

Ensure authorized user can create sample group.

test_unauthorized_sample_group_read()

Ensure 403 error is thrown if trying to illicitly read private group.

class pangea.core.tests.test_api.SampleTests(methodName='runTest')

Bases: rest_framework.test.APITestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_authorized_sample_read()

Ensure authorized user can read private sample group.

test_create_sample()

Ensure authorized user can create sample group.

test_create_sample_with_description()

Ensure authorized user can create sample group.

test_create_unauthenticated_sample()

Ensure 403 error is throw when trying to create sample if unauthenticated.

test_create_unauthorized_sample()

Ensure 403 error is throw when trying to create sample group if unauthorized.

test_get_sample_manifest()

Ensure authorized user can create sample group.

test_no_login_sample_list()

Ensure 403 error is thrown if trying to illicitly read private group.

test_no_login_sample_read()

Ensure 403 error is thrown if trying to illicitly read private group.

test_public_sample_read()

Ensure no login is required to read public group.

test_unauth_get_sample_manifest()

Ensure authorized user can create sample group.

test_unauthorized_sample_read()

Ensure 403 error is thrown if trying to illicitly read private group.

pangea.core.tests.test_api_analysis_result module

class pangea.core.tests.test_api_analysis_result.AnalysisResultTests(methodName='runTest')

Bases: rest_framework.test.APITestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_authorized_sample_analysis_result_read()

Ensure authorized user can read private sample group.

test_create_sample_analysis_result()

test_create_sample_analysis_result_with_description()

test_create_sample_group_analysis_result()

test_get_group_upload_url()

test_get_multipart_upload_url()

test_get_upload_url()

test_no_login_sample_analysis_result_list()

Ensure 403 error is thrown if trying to illicitly read private group.

test_no_login_sample_analysis_result_read()

Ensure 403 error is thrown if trying to illicitly read private group.

test_no_presign_s3_url_in_sample_ar_field()

test_presign_s3_url_in_sample_ar_field()

test_public_sample_analysis_result_read()

Ensure no login is required to read public group.

test_unauthorized_sample_analysis_result_read()

Ensure 403 error is thrown if trying to illicitly read private group.

test_use_group_upload_url()

test_use_multipart_upload_url(max_size=5242880)

test_use_upload_url()

pangea.core.tests.test_models module

Test suite for Sample model.

class pangea.core.tests.test_models.TestAnalysisResultModel(methodName='runTest')

Bases: django.test.testcases.TestCase

Test suite for Sample model.

test_add_ar_to_group()

Ensure sample model is created correctly.

test_add_ar_to_sample()

Ensure sample model is created correctly.

test_add_ar_with_metadata_to_sample()

Ensure sample model is created correctly.

test_add_dependencies_to_ar()

Ensure sample model is created correctly.

test_add_dup_dependencies_to_ar()

Ensure sample model is created correctly.

test_add_duplicate_module_replicate_to_group()

Ensure duplicate sample names and with same replicate are not allowed.

test_add_duplicate_module_replicate_to_sample()

Ensure duplicate sample names with same replicate are not allowed.

test_add_duplicate_module_to_group()

Ensure duplicate sample names and with diff replicate are allowed.

test_add_duplicate_module_to_sample()

Ensure duplicate sample names are not allowed.

test_add_duplicate_to_diff_groups()

Ensure duplicate sample names in different libraries are allowed.

test_add_duplicate_to_diff_samples()

Ensure duplicate sample names in different libraries are allowed.

class pangea.core.tests.test_models.TestProject(methodName='runTest')

Bases: django.test.testcases.TestCase

Test suite for Project model.

test_add_project()

Ensure sample model is created correctly.

class pangea.core.tests.test_models.TestS3ApiKeyModel(methodName='runTest')

Bases: django.test.testcases.TestCase

test_encrypt_on_save()

test_get_presigned_url()

class pangea.core.tests.test_models.TestSampleGroupModel(methodName='runTest')

Bases: django.test.testcases.TestCase

Test suite for SampleGroup model.

test_add_duplicate_name()

Ensure duplicate group names are not allowed.

test_add_sample_group()

Ensure sample group model is created correctly.

test_add_samples()

Ensure that samples can be added to SampleGroup.

test_core_sample_group_from_org()

Ensure we can get a core sample group from an organization.

class pangea.core.tests.test_models.TestSampleModel(methodName='runTest')

Bases: django.test.testcases.TestCase

Test suite for Sample model.

test_add_duplicate_name()

Ensure duplicate sample names are not allowed.

test_add_sample()

Ensure sample model is created correctly.

test_different_libraries()

Ensure duplicate sample names in different libraries are allowed.

class pangea.core.tests.test_models.TestUserModel(methodName='runTest')

Bases: django.test.testcases.TestCase

test_personal_org_from_user()

pangea.core.tests.test_nested_api module

class pangea.core.tests.test_nested_api.AnalysisResultTests(methodName='runTest')

Bases: rest_framework.test.APITestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_create_sample_analysis_result()

test_create_sample_analysis_result_with_name()

test_create_sample_group_analysis_result()

test_create_sample_group_analysis_result_with_name()

test_retrieve_sample_analysis_result()

Ensure we can retrieve analysis result.

class pangea.core.tests.test_nested_api.NestedSampleGroupTests(methodName='runTest')

Bases: rest_framework.test.APITestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_create_sample_group()

Ensure authorized user can create sample group.

test_create_sample_group_with_name()

Ensure authorized user can create sample group.

test_retrieve_sample_group()

Ensure authorized user can create sample group.

test_retrieve_sample_group_case_insensitive()

Ensure authorized user can create sample group.

class pangea.core.tests.test_nested_api.NestedSampleTests(methodName='runTest')

Bases: rest_framework.test.APITestCase

classmethod setUpTestData()

Load initial data for the TestCase.

test_create_sample()

Ensure authorized user can create sample group.

test_create_sample_with_name()

Ensure authorized user can create sample group.

test_retrieve_sample()

Ensure authorized user can create sample group.

test_retrieve_sample_from_non_library()

Ensure authorized user can create sample group.

Module contents