Index

A

abstract (pangea.core.mixins.AutoCreatedUpdatedMixin.Meta attribute) (pangea.core.mixins.SoftDeleteMixin.Meta attribute) (pangea.core.models.analysis_result.AnalysisResult.Meta attribute) (pangea.core.models.analysis_result.AnalysisResultField.Meta attribute) add_auth_token() (pangea_api.Knex method) add_fieldsets (pangea.core.admin.PangeaUserAdmin attribute) add_form (pangea.core.admin.PangeaUserAdmin attribute) add_s3_bucket() (pangea.core.models.sample_group.SampleGroup method) add_sample() (pangea.core.models.sample_group.SampleGroup method) (pangea_api.SampleGroup method) add_sample_group() (pangea.core.models.project.Project method) add_sub_project() (pangea.core.models.project.Project method) add_super_project() (pangea.core.models.project.Project method) add_target_user() (pangea.core.tests.test_api.OrganizationMembershipTests method) analysis_result (pangea.core.models.analysis_result.SampleAnalysisResultField attribute) (pangea.core.models.analysis_result.SampleGroupAnalysisResultField attribute) analysis_result() (pangea_api.Sample method) (pangea_api.SampleGroup method) analysis_result_id (pangea.core.models.analysis_result.SampleAnalysisResultField attribute) (pangea.core.models.analysis_result.SampleGroupAnalysisResultField attribute)

analysis_result_set (pangea.core.models.sample.Sample attribute) (pangea.core.models.sample_group.SampleGroup attribute) AnalysisResult (class in pangea.core.models.analysis_result) (class in pangea_api.analysis_result) AnalysisResult.AnalysisResultStatus (class in pangea.core.models.analysis_result) AnalysisResult.Meta (class in pangea.core.models.analysis_result) AnalysisResultField (class in pangea.core.models.analysis_result) (class in pangea_api.analysis_result) AnalysisResultField.Meta (class in pangea.core.models.analysis_result) AnalysisResultFieldDownloadError AnalysisResultFieldError AnalysisResultTests (class in pangea.core.tests.test_api_analysis_result) (class in pangea.core.tests.test_nested_api) api_key (pangea.core.models.s3.S3Bucket attribute) as_s3_link() (pangea.core.models.analysis_result.AnalysisResultField method) auth_token (pangea.core.models.organization.PangeaUser attribute) authenticate() (pangea.core.param_auth.TokenParamAuthentication method) authorize_sample_ar_upload_url() (in module pangea.core.views.analysis_result_views) authorize_sample_group_ar_upload_url() (in module pangea.core.views.analysis_result_views) AutoCreatedUpdatedMixin (class in pangea.core.mixins) AutoCreatedUpdatedMixin.Meta (class in pangea.core.mixins)

B

base_fields (pangea.core.forms.PangeaUserChangeForm attribute) (pangea.core.forms.PangeaUserCreationForm attribute) (pangea.core.forms.PangeaUserCreationForm.Meta attribute) bucket (pangea.core.models.analysis_result.SampleAnalysisResultField attribute) (pangea.core.models.analysis_result.SampleGroupAnalysisResultField attribute) (pangea.core.models.s3.S3ApiKey attribute) (pangea.core.models.sample_group.SampleGroup attribute)

bucket_id (pangea.core.models.s3.S3ApiKey attribute) (pangea.core.models.sample_group.SampleGroup attribute) bucket_name() (pangea.core.admin.S3ApiKeyAdmin method)

C

cache_blob() (pangea_api.file_system_cache.FileSystemCache method) (pangea_api.remote_object.RemoteObject method) canon_url() (pangea_api.analysis_result.SampleAnalysisResultField method) (pangea_api.analysis_result.SampleGroupAnalysisResultField method) clean_tarball_cache() (in module pangea.core.views.sample_group_views) clear_blob() (pangea_api.file_system_cache.FileSystemCache method) core_sample_group (pangea.core.models.organization.Organization attribute) core_sample_group_uuid (pangea.core.models.organization.Organization attribute) CoreConfig (class in pangea.core.apps) create() (pangea_api.remote_object.RemoteObject method) create_analysis_result() (pangea.core.models.sample.Sample method) (pangea.core.models.sample_group.SampleGroup method)

create_complete_url() (pangea.core.models.s3.S3MultipartUploadUtil method) create_field() (pangea.core.models.analysis_result.SampleAnalysisResult method) (pangea.core.models.analysis_result.SampleGroupAnalysisResult method) create_presigned_url() (pangea.core.models.s3.S3MultipartUploadUtil method) create_project() (pangea.core.models.organization.Organization method) create_s3apikey() (pangea.core.models.s3.S3Bucket method) create_s3bucket() (pangea.core.models.organization.Organization method) create_sample() (pangea.core.models.sample_group.SampleGroup method) (pangea.core.models.sample_group.SampleLibrary method) create_sample_group() (pangea.core.models.organization.Organization method) create_superuser() (pangea.core.managers.PangeaUserManager method) create_user() (pangea.core.managers.PangeaUserManager method) created_at (pangea.core.mixins.AutoCreatedUpdatedMixin attribute)

D

declared_fields (pangea.core.forms.PangeaUserChangeForm attribute) (pangea.core.forms.PangeaUserCreationForm attribute) (pangea.core.forms.PangeaUserCreationForm.Meta attribute) decrypt() (pangea.core.encrypted_fields.EncryptedString method) (pangea.core.encrypted_fields.XOR static method) delete() (pangea.core.mixins.SoftDeleteMixin method) (pangea_api.Knex method) (pangea_api.remote_object.RemoteObject method) deleted_at (pangea.core.mixins.SoftDeleteMixin attribute) dependencies (pangea.core.migrations.0001_initial.Migration attribute) (pangea.core.migrations.0002_auto_20200323_1658.Migration attribute) (pangea.core.migrations.0003_s3apikey.Migration attribute) (pangea.core.migrations.0003_samplegroup_is_library.Migration attribute) (pangea.core.migrations.0004_merge_20200329_1743.Migration attribute) (pangea.core.migrations.0005_auto_20200822_0140.Migration attribute) (pangea.core.migrations.0006_auto_20200905_2245.Migration attribute) (pangea.core.migrations.0007_auto_20200905_2311.Migration attribute) (pangea.core.migrations.0008_auto_20200907_2159.Migration attribute)

description (pangea.core.models.analysis_result.AnalysisResult attribute) (pangea.core.models.project.Project attribute) (pangea.core.models.s3.S3ApiKey attribute) (pangea.core.models.sample.Sample attribute) (pangea.core.models.sample_group.SampleGroup attribute) download_file() (in module pangea.core.views.sample_group_views) (pangea_api.analysis_result.AnalysisResultField method)

E

encrypt() (pangea.core.encrypted_fields.XOR static method) EncryptedFieldException EncryptedString (class in pangea.core.encrypted_fields)

EncryptedTextField (class in pangea.core.encrypted_fields) endpoint_url (pangea.core.models.s3.S3Bucket attribute) ERROR (pangea.core.models.analysis_result.AnalysisResult.AnalysisResultStatus attribute) extra_kwargs (pangea.core.serializers.S3ApiKeySerializer.Meta attribute)

F

factory() (pangea.core.models.project.Project class method) (pangea.core.models.sample_group.SampleGroup class method) field() (pangea_api.analysis_result.SampleAnalysisResult method) (pangea_api.analysis_result.SampleGroupAnalysisResult method) field_name() (pangea.core.admin.SampleAnalysisResultFieldAdmin method) (pangea.core.admin.SampleGroupAnalysisResultFieldAdmin method) field_type (pangea.core.models.analysis_result.AnalysisResultField attribute) FieldNameListFilter (class in pangea.core.admin) fields (pangea.core.forms.PangeaUserChangeForm.Meta attribute) (pangea.core.forms.PangeaUserCreationForm.Meta attribute) (pangea.core.models.analysis_result.SampleAnalysisResult attribute) (pangea.core.models.analysis_result.SampleGroupAnalysisResult attribute) (pangea.core.search_indexes.OrganizationIndex attribute) (pangea.core.search_indexes.SampleGroupIndex attribute) (pangea.core.search_indexes.SampleIndex attribute) (pangea.core.serializers.OrganizationSerializer.Meta attribute) (pangea.core.serializers.PangeaUserSerializer.Meta attribute) (pangea.core.serializers.ProjectSerializer.Meta attribute) (pangea.core.serializers.S3ApiKeySerializer.Meta attribute) (pangea.core.serializers.S3BucketSerializer.Meta attribute) (pangea.core.serializers.SampleAnalysisResultFieldSerializer.Meta attribute) (pangea.core.serializers.SampleAnalysisResultSerializer.Meta attribute) (pangea.core.serializers.SampleGroupAnalysisResultFieldSerializer.Meta attribute) (pangea.core.serializers.SampleGroupAnalysisResultSerializer.Meta attribute) (pangea.core.serializers.SampleGroupSerializer.Meta attribute) (pangea.core.serializers.SampleSerializer.Meta attribute)

fieldsets (pangea.core.admin.PangeaUserAdmin attribute) FileSystemCache (class in pangea_api.file_system_cache) filter_queryset() (pangea.core.views.project_views.ProjectSampleGroupsView method) (pangea.core.views.sample_group_views.SampleGroupSamplesView method) (pangea.core.views.utils.PermissionedListCreateAPIView method) filterset_fields (pangea.core.views.analysis_result_views.SampleAnalysisResultCreateView attribute) (pangea.core.views.analysis_result_views.SampleAnalysisResultFieldCreateView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultCreateView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultFieldCreateView attribute) (pangea.core.views.organization_views.OrganizationCreateView attribute) (pangea.core.views.project_views.ProjectCreateView attribute) (pangea.core.views.sample_group_views.SampleGroupCreateView attribute) (pangea.core.views.sample_views.SampleCreateView attribute) form (pangea.core.admin.PangeaUserAdmin attribute) from_db_value() (pangea.core.encrypted_fields.EncryptedTextField method)

G

get() (pangea.core.search.SearchList method) (pangea_api.Knex method) (pangea_api.remote_object.RemoteObject method) get_analysis_results() (pangea_api.Sample method) (pangea_api.SampleGroup method) get_blob_filename() (pangea_api.analysis_result.AnalysisResultField method) get_cached_blob() (pangea_api.file_system_cache.FileSystemCache method) (pangea_api.remote_object.RemoteObject method) get_cached_blob_filepath() (pangea_api.file_system_cache.FileSystemCache method) get_download_url() (pangea_api.analysis_result.AnalysisResultField method) get_fields() (pangea_api.analysis_result.SampleAnalysisResult method) (pangea_api.analysis_result.SampleGroupAnalysisResult method) get_manifest() (pangea_api.Sample method) (pangea_api.SampleGroup method) get_model() (pangea.core.search_indexes.OrganizationIndex method) (pangea.core.search_indexes.SampleGroupIndex method) (pangea.core.search_indexes.SampleIndex method) get_next_by_date_joined() (pangea.core.models.organization.PangeaUser method) get_prep_value() (pangea.core.encrypted_fields.EncryptedTextField method) get_presigned_completion_url() (pangea.core.models.analysis_result.AnalysisResultField method) get_presigned_upload_url() (pangea.core.models.analysis_result.AnalysisResultField method) get_previous_by_date_joined() (pangea.core.models.organization.PangeaUser method)

get_queryset() (pangea.core.views.organization_views.OrganizationUsersView method) (pangea.core.views.s3_views.S3ApiKeyCreateView method) (pangea.core.views.s3_views.S3ApiKeyDetailsView method) (pangea.core.views.s3_views.S3BucketCreateView method) (pangea.core.views.s3_views.S3BucketDetailsView method) get_referenced_filename() (pangea_api.analysis_result.AnalysisResultField method) get_sample_ar_counts_in_group() (in module pangea.core.views.sample_group_views) get_sample_data_in_group() (in module pangea.core.views.sample_group_views) get_sample_group_manifest() (in module pangea.core.views.sample_group_views) get_sample_groups() (pangea_api.Organization method) get_sample_manifest() (in module pangea.core.views.sample_views) get_sample_metadata_in_group() (in module pangea.core.views.sample_group_views) get_samples() (pangea_api.SampleGroup method) get_serializer_class() (pangea.core.views.organization_views.OrganizationUsersView method) (pangea.core.views.project_views.ProjectSampleGroupsView method) (pangea.core.views.sample_group_views.SampleGroupSamplesView method) get_status_display() (pangea.core.models.analysis_result.AnalysisResult method) (pangea.core.models.analysis_result.SampleAnalysisResult method) (pangea.core.models.analysis_result.SampleGroupAnalysisResult method) get_tarball() (in module pangea.core.views.sample_group_views) group (pangea.core.models.sample_group.SampleLibrary attribute) group_id (pangea.core.models.sample_group.SampleLibrary attribute) groups (pangea.core.models.organization.PangeaUser attribute)

H

has_object_permission() (pangea.core.permissions.OrganizationPermission method) (pangea.core.permissions.ProjectPermission method) (pangea.core.permissions.S3ApiKeyPermission method) (pangea.core.permissions.S3BucketPermission method) (pangea.core.permissions.SampleAnalysisResultFieldPermission method) (pangea.core.permissions.SampleAnalysisResultPermission method) (pangea.core.permissions.SampleGroupAnalysisResultFieldPermission method) (pangea.core.permissions.SampleGroupAnalysisResultPermission method) (pangea.core.permissions.SampleGroupPermission method) (pangea.core.permissions.SamplePermission method)

I

id (pangea.core.models.organization.PangeaUser attribute) idem() (pangea_api.remote_object.RemoteObject method) initial (pangea.core.migrations.0001_initial.Migration attribute)

is_library (pangea.core.models.sample_group.SampleGroup attribute) is_public (pangea.core.models.project.Project attribute) (pangea.core.models.sample_group.SampleGroup attribute) is_uuid() (in module pangea.core.nested_urls)

K

key() (pangea.core.encrypted_fields.XOR static method)

Knex (class in pangea_api)

L

library (pangea.core.models.sample.Sample attribute) (pangea.core.models.sample_group.SampleGroup attribute) library_id (pangea.core.models.sample.Sample attribute) library_name() (pangea.core.admin.SampleAdmin method) list_display (pangea.core.admin.OrganizationAdmin attribute) (pangea.core.admin.PangeaUserAdmin attribute) (pangea.core.admin.ProjectAdmin attribute) (pangea.core.admin.S3ApiKeyAdmin attribute) (pangea.core.admin.S3BucketAdmin attribute) (pangea.core.admin.SampleAdmin attribute) (pangea.core.admin.SampleAnalysisResultAdmin attribute) (pangea.core.admin.SampleAnalysisResultFieldAdmin attribute) (pangea.core.admin.SampleGroupAdmin attribute) (pangea.core.admin.SampleGroupAnalysisResultAdmin attribute) (pangea.core.admin.SampleGroupAnalysisResultFieldAdmin attribute) (pangea.core.admin.SampleLibraryAdmin attribute) list_filter (pangea.core.admin.PangeaUserAdmin attribute) (pangea.core.admin.ProjectAdmin attribute) (pangea.core.admin.S3BucketAdmin attribute) (pangea.core.admin.SampleAdmin attribute) (pangea.core.admin.SampleAnalysisResultAdmin attribute) (pangea.core.admin.SampleAnalysisResultFieldAdmin attribute) (pangea.core.admin.SampleGroupAdmin attribute) (pangea.core.admin.SampleGroupAnalysisResultAdmin attribute) (pangea.core.admin.SampleGroupAnalysisResultFieldAdmin attribute) (pangea.core.admin.SampleLibraryAdmin attribute)

load_blob() (pangea_api.remote_object.RemoteObject method) logentry_set (pangea.core.models.organization.PangeaUser attribute) login() (pangea_api.Knex method) (pangea_api.User method) long_description (pangea.core.models.sample_group.SampleGroup attribute) lookup_allowed() (pangea.core.admin.S3ApiKeyAdmin method) (pangea.core.admin.S3BucketAdmin method) (pangea.core.admin.SampleAdmin method) (pangea.core.admin.SampleAnalysisResultAdmin method) (pangea.core.admin.SampleAnalysisResultFieldAdmin method) (pangea.core.admin.SampleGroupAdmin method) (pangea.core.admin.SampleGroupAnalysisResultAdmin method) (pangea.core.admin.SampleGroupAnalysisResultFieldAdmin method) (pangea.core.admin.SampleLibraryAdmin method)

M

main() (in module manage) make_tarball() (in module pangea.core.views.sample_group_views) manage (module) media (pangea.core.admin.OrganizationAdmin attribute) (pangea.core.admin.PangeaUserAdmin attribute) (pangea.core.admin.ProjectAdmin attribute) (pangea.core.admin.S3ApiKeyAdmin attribute) (pangea.core.admin.S3BucketAdmin attribute) (pangea.core.admin.SampleAdmin attribute) (pangea.core.admin.SampleAnalysisResultAdmin attribute) (pangea.core.admin.SampleAnalysisResultFieldAdmin attribute) (pangea.core.admin.SampleGroupAdmin attribute) (pangea.core.admin.SampleGroupAnalysisResultAdmin attribute) (pangea.core.admin.SampleGroupAnalysisResultFieldAdmin attribute) (pangea.core.admin.SampleLibraryAdmin attribute) (pangea.core.forms.PangeaUserChangeForm attribute) (pangea.core.forms.PangeaUserCreationForm attribute) (pangea.core.forms.PangeaUserCreationForm.Meta attribute) member_of_groups() (pangea.core.admin.SampleAdmin method) members() (pangea.core.admin.OrganizationAdmin method) metadata (pangea.core.models.analysis_result.AnalysisResult attribute) (pangea.core.models.sample.Sample attribute) (pangea.core.models.sample_group.SampleGroup attribute) Migration (class in pangea.core.migrations.0001_initial) (class in pangea.core.migrations.0002_auto_20200323_1658) (class in pangea.core.migrations.0003_s3apikey) (class in pangea.core.migrations.0003_samplegroup_is_library) (class in pangea.core.migrations.0004_merge_20200329_1743) (class in pangea.core.migrations.0005_auto_20200822_0140) (class in pangea.core.migrations.0006_auto_20200905_2245) (class in pangea.core.migrations.0007_auto_20200905_2311) (class in pangea.core.migrations.0008_auto_20200907_2159)

model (pangea.core.admin.PangeaUserAdmin attribute) (pangea.core.forms.PangeaUserChangeForm.Meta attribute) (pangea.core.forms.PangeaUserCreationForm.Meta attribute) (pangea.core.serializers.OrganizationSerializer.Meta attribute) (pangea.core.serializers.PangeaUserSerializer.Meta attribute) (pangea.core.serializers.ProjectSerializer.Meta attribute) (pangea.core.serializers.S3ApiKeySerializer.Meta attribute) (pangea.core.serializers.S3BucketSerializer.Meta attribute) (pangea.core.serializers.SampleAnalysisResultFieldSerializer.Meta attribute) (pangea.core.serializers.SampleAnalysisResultSerializer.Meta attribute) (pangea.core.serializers.SampleGroupAnalysisResultFieldSerializer.Meta attribute) (pangea.core.serializers.SampleGroupAnalysisResultSerializer.Meta attribute) (pangea.core.serializers.SampleGroupSerializer.Meta attribute) (pangea.core.serializers.SampleSerializer.Meta attribute) ModelError module_name (pangea.core.models.analysis_result.AnalysisResult attribute) module_name() (pangea.core.admin.SampleAnalysisResultFieldAdmin method) (pangea.core.admin.SampleGroupAnalysisResultFieldAdmin method)

N

name (pangea.core.apps.CoreConfig attribute) (pangea.core.models.analysis_result.AnalysisResultField attribute) (pangea.core.models.organization.Organization attribute) (pangea.core.models.project.Project attribute) (pangea.core.models.s3.S3Bucket attribute) (pangea.core.models.sample.Sample attribute) (pangea.core.models.sample_group.SampleGroup attribute) (pangea.core.search_indexes.OrganizationIndex attribute) (pangea.core.search_indexes.SampleGroupIndex attribute) (pangea.core.search_indexes.SampleIndex attribute)

name() (pangea.core.admin.SampleLibraryAdmin method) nested_path() (in module pangea.core.nested_urls) nested_url() (pangea_api.analysis_result.AnalysisResultField method) (pangea_api.Organization method) (pangea_api.Sample method) (pangea_api.SampleGroup method) (pangea_api.analysis_result.SampleAnalysisResult method) (pangea_api.analysis_result.SampleGroupAnalysisResult method) NestedSampleGroupTests (class in pangea.core.tests.test_nested_api) NestedSampleTests (class in pangea.core.tests.test_nested_api)

O

objects (pangea.core.models.analysis_result.SampleAnalysisResult attribute) (pangea.core.models.analysis_result.SampleAnalysisResultField attribute) (pangea.core.models.analysis_result.SampleGroupAnalysisResult attribute) (pangea.core.models.analysis_result.SampleGroupAnalysisResultField attribute) (pangea.core.models.organization.Organization attribute) (pangea.core.models.organization.PangeaUser attribute) (pangea.core.models.project.Project attribute) (pangea.core.models.s3.S3ApiKey attribute) (pangea.core.models.s3.S3Bucket attribute) (pangea.core.models.sample.Sample attribute) (pangea.core.models.sample_group.SampleGroup attribute) (pangea.core.models.sample_group.SampleLibrary attribute) (pangea.core.search_indexes.OrganizationIndex attribute) (pangea.core.search_indexes.SampleGroupIndex attribute) (pangea.core.search_indexes.SampleIndex attribute) operations (pangea.core.migrations.0001_initial.Migration attribute) (pangea.core.migrations.0002_auto_20200323_1658.Migration attribute) (pangea.core.migrations.0003_s3apikey.Migration attribute) (pangea.core.migrations.0003_samplegroup_is_library.Migration attribute) (pangea.core.migrations.0004_merge_20200329_1743.Migration attribute) (pangea.core.migrations.0005_auto_20200822_0140.Migration attribute) (pangea.core.migrations.0006_auto_20200905_2245.Migration attribute) (pangea.core.migrations.0007_auto_20200905_2311.Migration attribute) (pangea.core.migrations.0008_auto_20200907_2159.Migration attribute) optional_remote_fields (pangea_api.remote_object.RemoteObject attribute) ordering (pangea.core.admin.PangeaUserAdmin attribute) Organization (class in pangea.core.models.organization) (class in pangea_api)

organization (pangea.core.models.project.Project attribute) (pangea.core.models.s3.S3Bucket attribute) (pangea.core.models.sample.Sample attribute) (pangea.core.models.sample_group.SampleGroup attribute) Organization.DoesNotExist Organization.MultipleObjectsReturned organization_id (pangea.core.models.project.Project attribute) (pangea.core.models.s3.S3Bucket attribute) (pangea.core.models.sample_group.SampleGroup attribute) organization_name() (pangea.core.admin.S3ApiKeyAdmin method) (pangea.core.admin.S3BucketAdmin method) (pangea.core.admin.SampleGroupAdmin method) (pangea.core.admin.SampleLibraryAdmin method) organization_set (pangea.core.models.organization.PangeaUser attribute) OrganizationAddUserSerializer (class in pangea.core.serializers) OrganizationAdmin (class in pangea.core.admin) OrganizationCreateView (class in pangea.core.views.organization_views) OrganizationDetailsView (class in pangea.core.views.organization_views) OrganizationIndex (class in pangea.core.search_indexes) OrganizationMembershipTests (class in pangea.core.tests.test_api) OrganizationPermission (class in pangea.core.permissions) OrganizationSerializer (class in pangea.core.serializers) OrganizationSerializer.Meta (class in pangea.core.serializers) OrganizationTests (class in pangea.core.tests.test_api) OrganizationUsersView (class in pangea.core.views.organization_views) owned_samples (pangea.core.models.sample_group.SampleLibrary attribute)

P

pangea (module) pangea.core (module) pangea.core.admin (module) pangea.core.apps (module) pangea.core.encrypted_fields (module) pangea.core.exceptions (module) pangea.core.forms (module) pangea.core.managers (module) pangea.core.migrations (module) pangea.core.migrations.0001_initial (module) pangea.core.migrations.0002_auto_20200323_1658 (module) pangea.core.migrations.0003_s3apikey (module) pangea.core.migrations.0003_samplegroup_is_library (module) pangea.core.migrations.0004_merge_20200329_1743 (module) pangea.core.migrations.0005_auto_20200822_0140 (module) pangea.core.migrations.0006_auto_20200905_2245 (module) pangea.core.migrations.0007_auto_20200905_2311 (module) pangea.core.migrations.0008_auto_20200907_2159 (module) pangea.core.mixins (module) pangea.core.models (module) pangea.core.models.analysis_result (module) pangea.core.models.exceptions (module) pangea.core.models.organization (module) pangea.core.models.project (module) pangea.core.models.s3 (module) pangea.core.models.sample (module) pangea.core.models.sample_group (module) pangea.core.nested_urls (module) pangea.core.param_auth (module) pangea.core.permissions (module) pangea.core.search (module) pangea.core.search_indexes (module) pangea.core.serializers (module) pangea.core.tests (module) pangea.core.tests.constants (module) pangea.core.tests.test_api (module) pangea.core.tests.test_api_analysis_result (module) pangea.core.tests.test_models (module) pangea.core.tests.test_nested_api (module) pangea.core.urls (module) pangea.core.utils (module) pangea.core.views (module) pangea.core.views.analysis_result_views (module) pangea.core.views.organization_views (module) pangea.core.views.project_views (module) pangea.core.views.s3_views (module) pangea.core.views.sample_group_views (module) pangea.core.views.sample_views (module) pangea.core.views.utils (module) pangea.settings (module) PangeaUser (class in pangea.core.models.organization) PangeaUser.DoesNotExist PangeaUser.MultipleObjectsReturned pangeauser_set (pangea.core.models.sample_group.SampleGroup attribute) PangeaUserAdmin (class in pangea.core.admin) PangeaUserChangeForm (class in pangea.core.forms) PangeaUserChangeForm.Meta (class in pangea.core.forms) PangeaUserCreationForm (class in pangea.core.forms) PangeaUserCreationForm.Meta (class in pangea.core.forms) PangeaUserManager (class in pangea.core.managers) PangeaUserSerializer (class in pangea.core.serializers) PangeaUserSerializer.Meta (class in pangea.core.serializers) parent_field (pangea_api.analysis_result.AnalysisResultField attribute) (pangea_api.Organization attribute) (pangea_api.Sample attribute) (pangea_api.SampleGroup attribute) (pangea_api.analysis_result.SampleAnalysisResult attribute) (pangea_api.analysis_result.SampleGroupAnalysisResult attribute) path() (in module pangea.core.nested_urls) (in module pangea.core.urls) PENDING (pangea.core.models.analysis_result.AnalysisResult.AnalysisResultStatus attribute) perform_create() (pangea.core.views.analysis_result_views.SampleAnalysisResultCreateView method) (pangea.core.views.analysis_result_views.SampleAnalysisResultFieldCreateView method) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultCreateView method) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultFieldCreateView method) (pangea.core.views.organization_views.OrganizationCreateView method) (pangea.core.views.project_views.ProjectCreateView method) (pangea.core.views.s3_views.S3ApiKeyCreateView method) (pangea.core.views.s3_views.S3BucketCreateView method) (pangea.core.views.sample_group_views.SampleGroupCreateView method) (pangea.core.views.sample_views.SampleCreateView method)

permission (pangea.core.views.analysis_result_views.SampleAnalysisResultCreateView attribute) (pangea.core.views.analysis_result_views.SampleAnalysisResultFieldCreateView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultCreateView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultFieldCreateView attribute) (pangea.core.views.project_views.ProjectCreateView attribute) (pangea.core.views.sample_group_views.SampleGroupCreateView attribute) (pangea.core.views.sample_views.SampleCreateView attribute) permission_classes (pangea.core.views.analysis_result_views.SampleAnalysisResultCreateView attribute) (pangea.core.views.analysis_result_views.SampleAnalysisResultDetailsView attribute) (pangea.core.views.analysis_result_views.SampleAnalysisResultFieldCreateView attribute) (pangea.core.views.analysis_result_views.SampleAnalysisResultFieldDetailsView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultCreateView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultDetailsView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultFieldCreateView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultFieldDetailsView attribute) (pangea.core.views.organization_views.OrganizationCreateView attribute) (pangea.core.views.organization_views.OrganizationDetailsView attribute) (pangea.core.views.organization_views.OrganizationUsersView attribute) (pangea.core.views.project_views.ProjectCreateView attribute) (pangea.core.views.project_views.ProjectDetailsView attribute) (pangea.core.views.project_views.ProjectSampleGroupsView attribute) (pangea.core.views.s3_views.S3ApiKeyCreateView attribute) (pangea.core.views.s3_views.S3ApiKeyDetailsView attribute) (pangea.core.views.s3_views.S3BucketCreateView attribute) (pangea.core.views.s3_views.S3BucketDetailsView attribute) (pangea.core.views.sample_group_views.SampleGroupCreateView attribute) (pangea.core.views.sample_group_views.SampleGroupDetailsView attribute) (pangea.core.views.sample_group_views.SampleGroupSamplesView attribute) (pangea.core.views.sample_views.SampleCreateView attribute) (pangea.core.views.sample_views.SampleDetailsView attribute) PermissionedListCreateAPIView (class in pangea.core.views.utils) personal_org (pangea.core.models.organization.PangeaUser attribute) personal_org_uuid (pangea.core.models.organization.PangeaUser attribute) post() (pangea.core.views.organization_views.OrganizationUsersView method) (pangea.core.views.project_views.ProjectSampleGroupsView method) (pangea.core.views.sample_group_views.SampleGroupSamplesView method) (pangea_api.Knex method) post_sample_ar_complete_multipart_upload_url() (in module pangea.core.views.analysis_result_views) post_sample_ar_upload_url() (in module pangea.core.views.analysis_result_views) post_sample_group_ar_complete_multipart_upload_url() (in module pangea.core.views.analysis_result_views) post_sample_group_ar_upload_url() (in module pangea.core.views.analysis_result_views) pre_hash() (pangea_api.analysis_result.AnalysisResult method) (pangea_api.Organization method) (pangea_api.Sample method) (pangea_api.SampleGroup method) (pangea_api.analysis_result.AnalysisResultField method) prefix (pangea.core.encrypted_fields.XOR attribute) presign_ar_field_stored_data_if_appropriate() (in module pangea.core.serializers) presign_completion_url() (pangea.core.models.s3.S3ApiKey method) (pangea.core.models.s3.S3Bucket method) presign_url() (pangea.core.models.s3.S3ApiKey method) (pangea.core.models.s3.S3Bucket method) private_key (pangea.core.models.s3.S3ApiKey attribute) Project (class in pangea.core.models.project) Project.DoesNotExist Project.MultipleObjectsReturned project_set (pangea.core.models.organization.Organization attribute) (pangea.core.models.sample_group.SampleGroup attribute) ProjectAddSampleGroupSerializer (class in pangea.core.serializers) ProjectAdmin (class in pangea.core.admin) ProjectCreateView (class in pangea.core.views.project_views) ProjectDetailsView (class in pangea.core.views.project_views) ProjectPermission (class in pangea.core.permissions) ProjectSampleGroupsView (class in pangea.core.views.project_views) ProjectSerializer (class in pangea.core.serializers) ProjectSerializer.Meta (class in pangea.core.serializers) ProjectTests (class in pangea.core.tests.test_api) public_key (pangea.core.models.s3.S3ApiKey attribute) put() (pangea_api.Knex method)

Q

queryset (pangea.core.views.analysis_result_views.SampleAnalysisResultCreateView attribute) (pangea.core.views.analysis_result_views.SampleAnalysisResultDetailsView attribute) (pangea.core.views.analysis_result_views.SampleAnalysisResultFieldCreateView attribute) (pangea.core.views.analysis_result_views.SampleAnalysisResultFieldDetailsView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultCreateView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultDetailsView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultFieldCreateView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultFieldDetailsView attribute) (pangea.core.views.organization_views.OrganizationCreateView attribute) (pangea.core.views.organization_views.OrganizationDetailsView attribute) (pangea.core.views.project_views.ProjectCreateView attribute) (pangea.core.views.project_views.ProjectDetailsView attribute) (pangea.core.views.project_views.ProjectSampleGroupsView attribute) (pangea.core.views.sample_group_views.SampleGroupCreateView attribute) (pangea.core.views.sample_group_views.SampleGroupDetailsView attribute) (pangea.core.views.sample_group_views.SampleGroupSamplesView attribute) (pangea.core.views.sample_views.SampleCreateView attribute) (pangea.core.views.sample_views.SampleDetailsView attribute)

R

random_replicate_name() (in module pangea.core.utils) read_only_fields (pangea.core.serializers.OrganizationSerializer.Meta attribute) (pangea.core.serializers.PangeaUserSerializer.Meta attribute) (pangea.core.serializers.ProjectSerializer.Meta attribute) (pangea.core.serializers.S3ApiKeySerializer.Meta attribute) (pangea.core.serializers.SampleAnalysisResultFieldSerializer.Meta attribute) (pangea.core.serializers.SampleAnalysisResultSerializer.Meta attribute) (pangea.core.serializers.SampleGroupAnalysisResultFieldSerializer.Meta attribute) (pangea.core.serializers.SampleGroupAnalysisResultSerializer.Meta attribute) (pangea.core.serializers.SampleGroupSerializer.Meta attribute) (pangea.core.serializers.SampleSerializer.Meta attribute)

referenced_filename() (in module pangea.core.views.sample_group_views) register() (pangea_api.User method) remote_fields (pangea_api.analysis_result.AnalysisResult attribute) (pangea_api.Organization attribute) (pangea_api.Sample attribute) (pangea_api.SampleGroup attribute) (pangea_api.analysis_result.AnalysisResultField attribute) RemoteObject (class in pangea_api.remote_object) replicate (pangea.core.models.analysis_result.AnalysisResult attribute) REQUIRED_FIELDS (pangea.core.models.organization.PangeaUser attribute)

S

s3 (pangea.core.models.s3.S3ApiKey attribute) S3ApiKey (class in pangea.core.models.s3) S3ApiKey.DoesNotExist S3ApiKey.MultipleObjectsReturned S3ApiKeyAdmin (class in pangea.core.admin) S3ApiKeyCreateView (class in pangea.core.views.s3_views) S3ApiKeyDetailsView (class in pangea.core.views.s3_views) S3ApiKeyPermission (class in pangea.core.permissions) S3ApiKeySerializer (class in pangea.core.serializers) S3ApiKeySerializer.Meta (class in pangea.core.serializers) S3ApiKeyTests (class in pangea.core.tests.test_api) S3Bucket (class in pangea.core.models.s3) S3Bucket.DoesNotExist S3Bucket.MultipleObjectsReturned s3bucket_set (pangea.core.models.organization.Organization attribute) S3BucketAdmin (class in pangea.core.admin) S3BucketCreateView (class in pangea.core.views.s3_views) S3BucketDetailsView (class in pangea.core.views.s3_views) S3BucketPermission (class in pangea.core.permissions) S3BucketSerializer (class in pangea.core.serializers) S3BucketSerializer.Meta (class in pangea.core.serializers) S3BucketTests (class in pangea.core.tests.test_api) S3MultipartUploadUtil (class in pangea.core.models.s3) Sample (class in pangea.core.models.sample) (class in pangea_api) sample (pangea.core.models.analysis_result.SampleAnalysisResult attribute) sample() (pangea_api.SampleGroup method) Sample.DoesNotExist Sample.MultipleObjectsReturned sample_group (pangea.core.models.analysis_result.SampleGroupAnalysisResult attribute) sample_group() (pangea_api.Organization method) sample_group_id (pangea.core.models.analysis_result.SampleGroupAnalysisResult attribute) sample_group_name() (pangea.core.admin.SampleGroupAnalysisResultAdmin method) (pangea.core.admin.SampleGroupAnalysisResultFieldAdmin method) sample_groups (pangea.core.models.project.Project attribute) (pangea.core.models.sample.Sample attribute) sample_id (pangea.core.models.analysis_result.SampleAnalysisResult attribute) sample_name() (pangea.core.admin.SampleAnalysisResultAdmin method) (pangea.core.admin.SampleAnalysisResultFieldAdmin method) sample_set (pangea.core.models.sample_group.SampleGroup attribute) SampleAdmin (class in pangea.core.admin) SampleAnalysisResult (class in pangea.core.models.analysis_result) (class in pangea_api.analysis_result) SampleAnalysisResult.DoesNotExist SampleAnalysisResult.MultipleObjectsReturned SampleAnalysisResultAdmin (class in pangea.core.admin) SampleAnalysisResultCreateView (class in pangea.core.views.analysis_result_views) SampleAnalysisResultDetailsView (class in pangea.core.views.analysis_result_views) SampleAnalysisResultField (class in pangea.core.models.analysis_result) (class in pangea_api.analysis_result) SampleAnalysisResultField.DoesNotExist SampleAnalysisResultField.MultipleObjectsReturned SampleAnalysisResultFieldAdmin (class in pangea.core.admin) SampleAnalysisResultFieldCreateView (class in pangea.core.views.analysis_result_views) SampleAnalysisResultFieldDetailsView (class in pangea.core.views.analysis_result_views) SampleAnalysisResultFieldPermission (class in pangea.core.permissions) SampleAnalysisResultFieldSerializer (class in pangea.core.serializers) SampleAnalysisResultFieldSerializer.Meta (class in pangea.core.serializers) SampleAnalysisResultPermission (class in pangea.core.permissions) SampleAnalysisResultSerializer (class in pangea.core.serializers) SampleAnalysisResultSerializer.Meta (class in pangea.core.serializers) SampleCreateView (class in pangea.core.views.sample_views) SampleDetailsView (class in pangea.core.views.sample_views) SampleGroup (class in pangea.core.models.sample_group) (class in pangea_api) SampleGroup.DoesNotExist SampleGroup.MultipleObjectsReturned samplegroup_set (pangea.core.models.organization.Organization attribute) (pangea.core.models.s3.S3Bucket attribute) SampleGroupAddSampleSerializer (class in pangea.core.serializers) SampleGroupAdmin (class in pangea.core.admin) SampleGroupAnalysisResult (class in pangea.core.models.analysis_result) (class in pangea_api.analysis_result) SampleGroupAnalysisResult.DoesNotExist SampleGroupAnalysisResult.MultipleObjectsReturned SampleGroupAnalysisResultAdmin (class in pangea.core.admin) SampleGroupAnalysisResultCreateView (class in pangea.core.views.analysis_result_views) SampleGroupAnalysisResultDetailsView (class in pangea.core.views.analysis_result_views) SampleGroupAnalysisResultField (class in pangea.core.models.analysis_result) (class in pangea_api.analysis_result) SampleGroupAnalysisResultField.DoesNotExist SampleGroupAnalysisResultField.MultipleObjectsReturned

SampleGroupAnalysisResultFieldAdmin (class in pangea.core.admin) SampleGroupAnalysisResultFieldCreateView (class in pangea.core.views.analysis_result_views) SampleGroupAnalysisResultFieldDetailsView (class in pangea.core.views.analysis_result_views) SampleGroupAnalysisResultFieldPermission (class in pangea.core.permissions) SampleGroupAnalysisResultFieldSerializer (class in pangea.core.serializers) SampleGroupAnalysisResultFieldSerializer.Meta (class in pangea.core.serializers) SampleGroupAnalysisResultPermission (class in pangea.core.permissions) SampleGroupAnalysisResultSerializer (class in pangea.core.serializers) SampleGroupAnalysisResultSerializer.Meta (class in pangea.core.serializers) SampleGroupCreateView (class in pangea.core.views.sample_group_views) SampleGroupDetailsView (class in pangea.core.views.sample_group_views) SampleGroupIndex (class in pangea.core.search_indexes) SampleGroupMembershipTests (class in pangea.core.tests.test_api) SampleGroupPermission (class in pangea.core.permissions) SampleGroupSamplesView (class in pangea.core.views.sample_group_views) SampleGroupSerializer (class in pangea.core.serializers) SampleGroupSerializer.Meta (class in pangea.core.serializers) SampleGroupTests (class in pangea.core.tests.test_api) SampleIndex (class in pangea.core.search_indexes) SampleLibrary (class in pangea.core.models.sample_group) SampleLibrary.DoesNotExist SampleLibrary.MultipleObjectsReturned SampleLibraryAdmin (class in pangea.core.admin) SampleOwnerError SamplePermission (class in pangea.core.permissions) SampleSerializer (class in pangea.core.serializers) SampleSerializer.Meta (class in pangea.core.serializers) SampleTests (class in pangea.core.tests.test_api) save() (pangea.core.mixins.AutoCreatedUpdatedMixin method) (pangea.core.models.analysis_result.AnalysisResult method) (pangea.core.models.analysis_result.AnalysisResultField method) (pangea.core.models.analysis_result.SampleAnalysisResult method) (pangea.core.models.analysis_result.SampleAnalysisResultField method) (pangea.core.models.analysis_result.SampleGroupAnalysisResult method) (pangea.core.models.analysis_result.SampleGroupAnalysisResultField method) (pangea.core.models.organization.Organization method) (pangea.core.models.s3.S3ApiKey method) (pangea.core.models.sample_group.SampleGroup method) (pangea_api.remote_object.RemoteObject method) saved_sample_groups (pangea.core.models.organization.PangeaUser attribute) search_fields (pangea.core.admin.PangeaUserAdmin attribute) SearchList (class in pangea.core.search) serializer_class (pangea.core.views.analysis_result_views.SampleAnalysisResultCreateView attribute) (pangea.core.views.analysis_result_views.SampleAnalysisResultDetailsView attribute) (pangea.core.views.analysis_result_views.SampleAnalysisResultFieldCreateView attribute) (pangea.core.views.analysis_result_views.SampleAnalysisResultFieldDetailsView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultCreateView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultDetailsView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultFieldCreateView attribute) (pangea.core.views.analysis_result_views.SampleGroupAnalysisResultFieldDetailsView attribute) (pangea.core.views.organization_views.OrganizationCreateView attribute) (pangea.core.views.organization_views.OrganizationDetailsView attribute) (pangea.core.views.project_views.ProjectCreateView attribute) (pangea.core.views.project_views.ProjectDetailsView attribute) (pangea.core.views.s3_views.S3ApiKeyCreateView attribute) (pangea.core.views.s3_views.S3ApiKeyDetailsView attribute) (pangea.core.views.s3_views.S3BucketCreateView attribute) (pangea.core.views.s3_views.S3BucketDetailsView attribute) (pangea.core.views.sample_group_views.SampleGroupCreateView attribute) (pangea.core.views.sample_group_views.SampleGroupDetailsView attribute) (pangea.core.views.sample_views.SampleCreateView attribute) (pangea.core.views.sample_views.SampleDetailsView attribute) setUpTestData() (pangea.core.tests.test_api.OrganizationMembershipTests class method) (pangea.core.tests.test_api.OrganizationTests class method) (pangea.core.tests.test_api.ProjectTests class method) (pangea.core.tests.test_api.S3ApiKeyTests class method) (pangea.core.tests.test_api.S3BucketTests class method) (pangea.core.tests.test_api.SampleGroupMembershipTests class method) (pangea.core.tests.test_api.SampleGroupTests class method) (pangea.core.tests.test_api.SampleTests class method) (pangea.core.tests.test_api_analysis_result.AnalysisResultTests class method) (pangea.core.tests.test_nested_api.AnalysisResultTests class method) (pangea.core.tests.test_nested_api.NestedSampleGroupTests class method) (pangea.core.tests.test_nested_api.NestedSampleTests class method) SoftDeleteMixin (class in pangea.core.mixins) SoftDeleteMixin.Meta (class in pangea.core.mixins) status (pangea.core.models.analysis_result.AnalysisResult attribute) stored_data (pangea.core.models.analysis_result.AnalysisResultField attribute) str2bool() (in module pangea.core.utils) sub_projects (pangea.core.models.project.Project attribute) SUCCESS (pangea.core.models.analysis_result.AnalysisResult.AnalysisResultStatus attribute) super_projects (pangea.core.models.project.Project attribute)

T

tags (pangea.core.models.sample.Sample attribute) (pangea.core.models.sample_group.SampleGroup attribute) test_add_ar_to_group() (pangea.core.tests.test_models.TestAnalysisResultModel method) test_add_ar_to_sample() (pangea.core.tests.test_models.TestAnalysisResultModel method) test_add_ar_with_metadata_to_sample() (pangea.core.tests.test_models.TestAnalysisResultModel method) test_add_dependencies_to_ar() (pangea.core.tests.test_models.TestAnalysisResultModel method) test_add_dup_dependencies_to_ar() (pangea.core.tests.test_models.TestAnalysisResultModel method) test_add_duplicate_module_replicate_to_group() (pangea.core.tests.test_models.TestAnalysisResultModel method) test_add_duplicate_module_replicate_to_sample() (pangea.core.tests.test_models.TestAnalysisResultModel method) test_add_duplicate_module_to_group() (pangea.core.tests.test_models.TestAnalysisResultModel method) test_add_duplicate_module_to_sample() (pangea.core.tests.test_models.TestAnalysisResultModel method) test_add_duplicate_name() (pangea.core.tests.test_models.TestSampleGroupModel method) (pangea.core.tests.test_models.TestSampleModel method) test_add_duplicate_to_diff_groups() (pangea.core.tests.test_models.TestAnalysisResultModel method) test_add_duplicate_to_diff_samples() (pangea.core.tests.test_models.TestAnalysisResultModel method) test_add_group_to_project() (pangea.core.tests.test_api.ProjectTests method) test_add_project() (pangea.core.tests.test_models.TestProject method) test_add_sample() (pangea.core.tests.test_models.TestSampleModel method) test_add_sample_group() (pangea.core.tests.test_models.TestSampleGroupModel method) test_add_samples() (pangea.core.tests.test_models.TestSampleGroupModel method) test_authorized_add_sample_to_group() (pangea.core.tests.test_api.SampleGroupMembershipTests method) test_authorized_add_user_to_organization() (pangea.core.tests.test_api.OrganizationMembershipTests method) test_authorized_project_read() (pangea.core.tests.test_api.ProjectTests method) test_authorized_s3apikey_list() (pangea.core.tests.test_api.S3ApiKeyTests method) test_authorized_s3apikey_read() (pangea.core.tests.test_api.S3ApiKeyTests method) test_authorized_s3bucket_list() (pangea.core.tests.test_api.S3BucketTests method) test_authorized_s3bucket_read() (pangea.core.tests.test_api.S3BucketTests method) test_authorized_sample_analysis_result_read() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) test_authorized_sample_group_read() (pangea.core.tests.test_api.SampleGroupTests method) test_authorized_sample_read() (pangea.core.tests.test_api.SampleTests method) test_core_sample_group_from_org() (pangea.core.tests.test_models.TestSampleGroupModel method) test_create_bucket() (pangea.core.tests.test_api.S3BucketTests method) test_create_key() (pangea.core.tests.test_api.S3ApiKeyTests method) test_create_organization() (pangea.core.tests.test_api.OrganizationTests method) test_create_project() (pangea.core.tests.test_api.ProjectTests method) test_create_sample() (pangea.core.tests.test_api.SampleTests method) (pangea.core.tests.test_nested_api.NestedSampleTests method) test_create_sample_analysis_result() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) (pangea.core.tests.test_nested_api.AnalysisResultTests method) test_create_sample_analysis_result_with_description() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) test_create_sample_analysis_result_with_name() (pangea.core.tests.test_nested_api.AnalysisResultTests method) test_create_sample_group() (pangea.core.tests.test_api.SampleGroupTests method) (pangea.core.tests.test_nested_api.NestedSampleGroupTests method) test_create_sample_group_analysis_result() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) (pangea.core.tests.test_nested_api.AnalysisResultTests method) test_create_sample_group_analysis_result_with_name() (pangea.core.tests.test_nested_api.AnalysisResultTests method) test_create_sample_group_with_descriptions() (pangea.core.tests.test_api.SampleGroupTests method) test_create_sample_group_with_name() (pangea.core.tests.test_nested_api.NestedSampleGroupTests method) test_create_sample_with_description() (pangea.core.tests.test_api.SampleTests method) test_create_sample_with_name() (pangea.core.tests.test_nested_api.NestedSampleTests method) test_create_unauthed_organization() (pangea.core.tests.test_api.OrganizationTests method) test_create_unauthenticated_sample() (pangea.core.tests.test_api.SampleTests method) test_create_unauthenticated_sample_group() (pangea.core.tests.test_api.SampleGroupTests method) test_create_unauthorized_sample() (pangea.core.tests.test_api.SampleTests method) test_create_unauthorized_sample_group() (pangea.core.tests.test_api.SampleGroupTests method) test_different_libraries() (pangea.core.tests.test_models.TestSampleModel method) test_encrypt_on_save() (pangea.core.tests.test_models.TestS3ApiKeyModel method) test_get_group_upload_url() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) test_get_multipart_upload_url() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) test_get_organization_users() (pangea.core.tests.test_api.OrganizationMembershipTests method) test_get_presigned_url() (pangea.core.tests.test_models.TestS3ApiKeyModel method)

test_get_sample_group_manifest() (pangea.core.tests.test_api.SampleGroupTests method) test_get_sample_group_manifest_with_token_as_param() (pangea.core.tests.test_api.SampleGroupTests method) test_get_sample_group_metadata_with_token_as_param() (pangea.core.tests.test_api.SampleGroupTests method) test_get_sample_group_samples() (pangea.core.tests.test_api.SampleGroupMembershipTests method) test_get_sample_manifest() (pangea.core.tests.test_api.SampleTests method) test_get_tarball() (pangea.core.tests.test_api.SampleGroupTests method) test_get_upload_url() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) test_no_login_project_read() (pangea.core.tests.test_api.ProjectTests method) test_no_login_s3apikey_list() (pangea.core.tests.test_api.S3ApiKeyTests method) test_no_login_s3apikey_read() (pangea.core.tests.test_api.S3ApiKeyTests method) test_no_login_s3bucket_list() (pangea.core.tests.test_api.S3BucketTests method) test_no_login_sample_analysis_result_list() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) test_no_login_sample_analysis_result_read() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) test_no_login_sample_group_list() (pangea.core.tests.test_api.SampleGroupTests method) test_no_login_sample_group_read() (pangea.core.tests.test_api.SampleGroupTests method) test_no_login_sample_list() (pangea.core.tests.test_api.SampleTests method) test_no_login_sample_read() (pangea.core.tests.test_api.SampleTests method) test_no_presign_s3_url_in_sample_ar_field() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) test_not_in_org_create_key() (pangea.core.tests.test_api.S3ApiKeyTests method) test_personal_org_from_user() (pangea.core.tests.test_models.TestUserModel method) test_presign_s3_url_in_sample_ar_field() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) test_public_project_read() (pangea.core.tests.test_api.ProjectTests method) test_public_sample_analysis_result_read() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) test_public_sample_group_read() (pangea.core.tests.test_api.SampleGroupTests method) test_public_sample_read() (pangea.core.tests.test_api.SampleTests method) test_retrieve_sample() (pangea.core.tests.test_nested_api.NestedSampleTests method) test_retrieve_sample_analysis_result() (pangea.core.tests.test_nested_api.AnalysisResultTests method) test_retrieve_sample_from_non_library() (pangea.core.tests.test_nested_api.NestedSampleTests method) test_retrieve_sample_group() (pangea.core.tests.test_nested_api.NestedSampleGroupTests method) test_retrieve_sample_group_case_insensitive() (pangea.core.tests.test_nested_api.NestedSampleGroupTests method) test_unauth_create_key() (pangea.core.tests.test_api.S3ApiKeyTests method) test_unauth_get_sample_group_manifest() (pangea.core.tests.test_api.SampleGroupTests method) test_unauth_get_sample_manifest() (pangea.core.tests.test_api.SampleTests method) test_unauthenticated_add_sample_to_group() (pangea.core.tests.test_api.SampleGroupMembershipTests method) test_unauthenticated_add_user_to_organization() (pangea.core.tests.test_api.OrganizationMembershipTests method) test_unauthorized_add_sample_to_group() (pangea.core.tests.test_api.SampleGroupMembershipTests method) test_unauthorized_add_user_to_organization() (pangea.core.tests.test_api.OrganizationMembershipTests method) test_unauthorized_project_read() (pangea.core.tests.test_api.ProjectTests method) test_unauthorized_s3apikey_list() (pangea.core.tests.test_api.S3ApiKeyTests method) test_unauthorized_s3apikey_read() (pangea.core.tests.test_api.S3ApiKeyTests method) test_unauthorized_s3bucket_list() (pangea.core.tests.test_api.S3BucketTests method) test_unauthorized_sample_analysis_result_read() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) test_unauthorized_sample_group_read() (pangea.core.tests.test_api.SampleGroupTests method) test_unauthorized_sample_read() (pangea.core.tests.test_api.SampleTests method) test_use_group_upload_url() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) test_use_multipart_upload_url() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) test_use_upload_url() (pangea.core.tests.test_api_analysis_result.AnalysisResultTests method) TestAnalysisResultModel (class in pangea.core.tests.test_models) TestProject (class in pangea.core.tests.test_models) TestS3ApiKeyModel (class in pangea.core.tests.test_models) TestSampleGroupModel (class in pangea.core.tests.test_models) TestSampleModel (class in pangea.core.tests.test_models) TestUserModel (class in pangea.core.tests.test_models) text (pangea.core.search_indexes.OrganizationIndex attribute) (pangea.core.search_indexes.SampleGroupIndex attribute) (pangea.core.search_indexes.SampleIndex attribute) theme (pangea.core.models.sample_group.SampleGroup attribute) to_python() (pangea.core.encrypted_fields.EncryptedTextField method) to_representation() (pangea.core.serializers.SampleAnalysisResultFieldSerializer method) (pangea.core.serializers.SampleGroupAnalysisResultFieldSerializer method) to_uuid() (in module pangea.core.nested_urls) TokenParamAuthentication (class in pangea.core.param_auth)

U

unique_together (pangea.core.models.analysis_result.AnalysisResultField.Meta attribute) updated_at (pangea.core.mixins.AutoCreatedUpdatedMixin attribute) upload_file() (pangea_api.analysis_result.AnalysisResultField method) upload_large_file() (pangea_api.analysis_result.AnalysisResultField method) upload_small_file() (pangea_api.analysis_result.AnalysisResultField method) User (class in pangea_api) user_permissions (pangea.core.models.organization.PangeaUser attribute) username (pangea.core.models.organization.PangeaUser attribute) (pangea_api.User attribute)

USERNAME_FIELD (pangea.core.models.organization.PangeaUser attribute) users (pangea.core.models.organization.Organization attribute) uuid (pangea.core.models.analysis_result.AnalysisResult attribute) (pangea.core.models.analysis_result.AnalysisResultField attribute) (pangea.core.models.organization.Organization attribute) (pangea.core.models.project.Project attribute) (pangea.core.models.s3.S3ApiKey attribute) (pangea.core.models.s3.S3Bucket attribute) (pangea.core.models.sample.Sample attribute) (pangea.core.models.sample_group.SampleGroup attribute)

W

WORKING (pangea.core.models.analysis_result.AnalysisResult.AnalysisResultStatus attribute)

X

XOR (class in pangea.core.encrypted_fields)